SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 20871105.
- Also identified by DOI 10.1093/bioinformatics/btq504 and PMC identifier 2981495.
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Abstract
SimiCon is a web server designed for an automated identification of equivalent protein-ligand atomic contacts in different conformational models of a complex. The contacts are computed with internal coordinate mechanics (ICM) software with respect to molecular symmetry and the results are shown in the browser as text, tables and interactive 3D graphics. The web server can be executed remotely without a browser to allow users to automate multiple calculations. SimiCon is freely available at http://abagyan.ucsd.edu/SimiCon
Medical subject headings
- Proteins
- Software