GeneReporter--sequence-based document retrieval and annotation.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 21310745.
- Also identified by DOI 10.1093/bioinformatics/btr047 and PMC identifier 3065684.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
GeneReporter is a web tool that reports functional information and relevant literature on a protein-coding sequence of interest. Its purpose is to support both manual genome annotation and document retrieval. PubMed references corresponding to a sequence are detected by the extraction of query words from UniProt entries of homologous sequences. Data on protein families, domains, potential cofactors, structure, function, cellular localization, metabolic contribution and corresponding DNA binding sites complement the information on a given gene product of interest. GeneReporter is available at http://www.genereporter.tu-bs.de. The web site integrates databases and analysis tools as SOAP-based web services from the EBI (European Bioinformatics Institute) and NCBI (National Center for Biotechnology Information).
Medical subject headings
- Molecular Sequence Annotation
- Sequence Analysis, Protein
- Software