ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 21427194.
- Also identified by DOI 10.1093/bioinformatics/btr117.
- No licence information is recorded for this record.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
ExpEdit is a web application for assessing RNA editing in human at known or user-specified sites supported by transcript data obtained by RNA-Seq experiments. Mapping data (in SAM/BAM format) or directly sequence reads [in FASTQ/short read archive (SRA) format] can be provided as input to carry out a comparative analysis against a large collection of known editing sites collected in DARNED database as well as other user-provided potentially edited positions. Results are shown as dynamic tables containing University of California, Santa Cruz (UCSC) links for a quick examination of the genomic context. ExpEdit is freely available on the web at http://www.caspur.it/ExpEdit/.
Medical subject headings
- Computational Biology
- Genomics
- Internet
- RNA Editing
- Sequence Analysis, RNA