Reliability-oriented bioinformatic networks visualization.
basic_science · Level V
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- Record sourced from PubMed, PMID 21478488.
- Also identified by DOI 10.1093/bioinformatics/btr178.
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Abstract
We present our protein-protein interaction (PPI) network visualization system RobinViz (reliability-oriented bioinformatic networks visualization). Clustering the PPI network based on gene ontology (GO) annotations or biclustered gene expression data, providing a clustered visualization model based on a central/peripheral duality, computing layouts with algorithms specialized for interaction reliabilities represented as weights, completely automated data acquisition, processing are notable features of the system. RobinViz is a free, open-source software protected under GPL. It is written in C++ and Python, and consists of almost 30 000 lines of code, excluding the employed libraries. Source code, user manual and other Supplementary Material are available for download at http://code.google.com/p/robinviz/.
Medical subject headings
- Computer Graphics
- Protein Interaction Mapping
- Software