Immune system simulation online.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 21685045.
- Also identified by DOI 10.1093/bioinformatics/btr335.
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Abstract
The recognition of antigenic peptides is a major event of an immune response. In current mesoscopic-scale simulators of the immune system, this crucial step has been modeled in a very approximated way. We have equipped an agent-based model of the immune system with immuno-informatics methods to allow the simulation of the cardinal events of the antigenic recognition, going from single peptides to whole proteomes. The recognition process accounts for B cell-epitopes prediction through Parker-scale affinity estimation, class I and II HLA peptide prediction and binding through position-specific scoring matrices based on information from known HLA epitopes prediction tools, and TCR binding to HLA-peptide complex calculated as the averaged sum of a residue-residue contact potential. These steps are executed for all lymphocytes agents encountering the antigen in a wide-reaching Monte Carlo simulation. http://www.cbs.dtu.dk/services/C-ImmSim-10.1/
Medical subject headings
- Computer Simulation
- Immune System
- Internet
- Models, Biological