SEAL: a distributed short read mapping and duplicate removal tool.
Where this comes from
- Record sourced from PubMed, PMID 21697132.
- Also identified by DOI 10.1093/bioinformatics/btr325 and PMC identifier 3137215.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
SEAL is a scalable tool for short read pair mapping and duplicate removal. It computes mappings that are consistent with those produced by BWA and removes duplicates according to the same criteria employed by Picard MarkDuplicates. On a 16-node Hadoop cluster, it is capable of processing about 13 GB per hour in map+rmdup mode, while reaching a throughput of 19 GB per hour in mapping-only mode. SEAL is available online at http://biodoop-seal.sourceforge.net/.
Medical subject headings
- Computational Biology
- Sequence Analysis, DNA
- Software