PGAT: a multistrain analysis resource for microbial genomes.
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- Record sourced from PubMed, PMID 21765097.
- Also identified by DOI 10.1093/bioinformatics/btr418 and PMC identifier 3157930.
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Abstract
The Prokaryotic-genome Analysis Tool (PGAT) is a web-based database application for comparing gene content and sequence across multiple microbial genomes facilitating the discovery of genetic differences that may explain observed phenotypes. PGAT supports database queries to identify genes that are present or absent in user-selected genomes, comparison of sequence polymorphisms in sets of orthologous genes, multigenome display of regions surrounding a query gene, comparison of the distribution of genes in metabolic pathways and manual community annotation. The PGAT website may be accessed at http://nwrce.org/pgat. mbrittna@uw.edu.
Medical subject headings
- Genome, Bacterial
- Genomics
- Software