Extending KNIME for next-generation sequencing data analysis.
Where this comes from
- Record sourced from PubMed, PMID 21873641.
- Also identified by DOI 10.1093/bioinformatics/btr478.
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Abstract
KNIME (Konstanz Information Miner) is a user-friendly and comprehensive open-source data integration, processing, analysis and exploration platform. We present here new functionality and workflows that open the door to performing next-generation sequencing analysis using the KNIME framework. All sources and compiled code are available via the KNIME update mechanism. Example workflows and descriptions are available through http://tech.knime.org/community/next-generation-sequencing. bernd.jagla@pasteur.fr Supplementary data are available at Bioinformatics online.
Medical subject headings
- High-Throughput Nucleotide Sequencing
- Software