The Infobiotics Workbench: an integrated in silico modelling platform for Systems and Synthetic Biology.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 21994219.
- Also identified by DOI 10.1093/bioinformatics/btr571 and PMC identifier 3223367.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
The Infobiotics Workbench is an integrated software suite incorporating model specification, simulation, parameter optimization and model checking for Systems and Synthetic Biology. A modular model specification allows for straightforward creation of large-scale models containing many compartments and reactions. Models are simulated either using stochastic simulation or numerical integration, and visualized in time and space. Model parameters and structure can be optimized with evolutionary algorithms, and model properties calculated using probabilistic model checking. Source code and binaries for Linux, Mac and Windows are available at http://www.infobiotics.org/infobiotics-workbench/; released under the GNU General Public License (GPL) version 3. Natalio.Krasnogor@nottingham.ac.uk.
Medical subject headings
- Models, Biological
- Models, Statistical