PopDrowser: the Population Drosophila Browser.
basic_science · Level V
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- Record sourced from PubMed, PMID 22180410.
- Also identified by DOI 10.1093/bioinformatics/btr691.
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Abstract
The completion of 168 genome sequences from a single population of Drosophila melanogaster provides a global view of genomic variation and an understanding of the evolutionary forces shaping the patterns of DNA polymorphism and divergence along the genome. We present the 'Population Drosophila Browser' (PopDrowser), a new genome browser specially designed for the automatic analysis and representation of genetic variation across the D. melanogaster genome sequence. PopDrowser allows estimating and visualizing the values of a number of DNA polymorphism and divergence summary statistics, linkage disequilibrium parameters and several neutrality tests. PopDrowser also allows performing custom analyses on-the-fly using user-selected parameters. PopDrowser is freely available from http://PopDrowser.uab.cat.
Medical subject headings
- Drosophila
- Drosophila melanogaster