htSeqTools: high-throughput sequencing quality control, processing and visualization in R.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 22199381.
- Also identified by DOI 10.1093/bioinformatics/btr700.
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Abstract
We provide a Bioconductor package with quality assessment, processing and visualization tools for high-throughput sequencing data, with emphasis in ChIP-seq and RNA-seq studies. It includes detection of outliers and biases, inefficient immuno-precipitation and overamplification artifacts, de novo identification of read-rich genomic regions and visualization of the location and coverage of genomic region lists. www.bioconductor.org.
Medical subject headings
- High-Throughput Nucleotide Sequencing
- Software