PaGeFinder: quantitative identification of spatiotemporal pattern genes.
basic_science · Level V
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- Record sourced from PubMed, PMID 22492640.
- Also identified by DOI 10.1093/bioinformatics/bts169 and PMC identifier 3356841.
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Abstract
Pattern Gene Finder (PaGeFinder) is a web-based server for on-line detection of gene expression patterns from serial transcriptomic data generated by high-throughput technologies like microarray or next-generation sequencing. Three particular parameters, the specificity measure, the dispersion measure and the contribution measure, were introduced and implemented in PaGeFinder to help quantitative and interactive identification of pattern genes like housekeeping genes, specific (selective) genes and repressed genes. Besides the on-line computation service, the PaGeFinder also provides downloadable Java programs for local detection of gene expression patterns. http://bioinf.xmu.edu.cn:8080/PaGeFinder/index.jsp
Medical subject headings
- Gene Expression Profiling