NetworkView: 3D display and analysis of protein·RNA interaction networks.
basic_science · Level V
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- Record sourced from PubMed, PMID 22982572.
- Also identified by DOI 10.1093/bioinformatics/bts546 and PMC identifier 3496333.
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Abstract
NetworkView is an application for the display and analysis of protein·RNA interaction networks derived from structure and/or dynamics. These networks typically model individual protein residues and nucleic acid monomers as nodes and their pairwise contacts as edges with associated weights. NetworkView projects the network onto the underlying 3D molecular structure so that visualization and analysis of the network can be coupled to physical and biological properties. NetworkView is implemented as a plugin to the molecular visualization software VMD. NetworkView is included with VMD, which is available at http://www.ks.uiuc.edu/Research/vmd/. Documentation, tutorials and supporting programs are available at http://www.scs.illinois.edu/schulten/software/. networkview@scs.illinois.edu
Medical subject headings
- RNA
- RNA-Binding Proteins
- Software