MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 23044549.
- Also identified by DOI 10.1093/bioinformatics/bts567 and PMC identifier 3530914.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Numerous metagenomics projects have produced tremendous amounts of sequencing data. Aligning these sequences to reference genomes is an essential analysis in metagenomics studies. Large-scale alignment data call for intuitive and efficient visualization tool. However, current tools such as various genome browsers are highly specialized to handle intraspecies mapping results. They are not suitable for alignment data in metagenomics, which are often interspecies alignments. We have developed a web browser-based desktop application for interactively visualizing alignment data of metagenomic sequences. This viewer is easy to use on all computer systems with modern web browsers and requires no software installation. http://weizhongli-lab.org/mgaviewer
Medical subject headings
- Metagenomics
- Sequence Alignment
- Software