Using GBrowse 2.0 to visualize and share next-generation sequence data.
Where this comes from
- Record sourced from PubMed, PMID 23376193.
- Also identified by DOI 10.1093/bib/bbt001 and PMC identifier 3603216.
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Abstract
GBrowse is a mature web-based genome browser that is suitable for deployment on both public and private web sites. It supports most of genome browser features, including qualitative and quantitative (wiggle) tracks, track uploading, track sharing, interactive track configuration, semantic zooming and limited smooth track panning. As of version 2.0, GBrowse supports next-generation sequencing (NGS) data by providing for the direct display of SAM and BAM sequence alignment files. SAM/BAM tracks provide semantic zooming and support both local and remote data sources. This article provides step-by-step instructions for configuring GBrowse to display NGS data.
Medical subject headings
- Databases, Genetic
- Software