BioBlend: automating pipeline analyses within Galaxy and CloudMan.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 23630176.
- Also identified by DOI 10.1093/bioinformatics/btt199 and PMC identifier 4288140.
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Abstract
We present BioBlend, a unified API in a high-level language (python) that wraps the functionality of Galaxy and CloudMan APIs. BioBlend makes it easy for bioinformaticians to automate end-to-end large data analysis, from scratch, in a way that is highly accessible to collaborators, by allowing them to both provide the required infrastructure and automate complex analyses over large datasets within the familiar Galaxy environment. http://bioblend.readthedocs.org/. Automated installation of BioBlend is available via PyPI (e.g. pip install bioblend). Alternatively, the source code is available from the GitHub repository (https://github.com/afgane/bioblend) under the MIT open source license. The library has been tested and is working on Linux, Macintosh and Windows-based systems.
Medical subject headings
- Genomics
- Software