Mouse model phenotypes provide information about human drug targets.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 24158600.
- Also identified by DOI 10.1093/bioinformatics/btt613 and PMC identifier 3933875.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Methods for computational drug target identification use information from diverse information sources to predict or prioritize drug targets for known drugs. One set of resources that has been relatively neglected for drug repurposing is animal model phenotype. We investigate the use of mouse model phenotypes for drug target identification. To achieve this goal, we first integrate mouse model phenotypes and drug effects, and then systematically compare the phenotypic similarity between mouse models and drug effect profiles. We find a high similarity between phenotypes resulting from loss-of-function mutations and drug effects resulting from the inhibition of a protein through a drug action, and demonstrate how this approach can be used to suggest candidate drug targets. Analysis code and supplementary data files are available on the project Web site at https://drugeffects.googlecode.com.
Medical subject headings
- Drug Repositioning
- Phenotype
- Proteins