CGAT: computational genomics analysis toolkit.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 24395753.
- Also identified by DOI 10.1093/bioinformatics/btt756 and PMC identifier 3998125.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Computational genomics seeks to draw biological inferences from genomic datasets, often by integrating and contextualizing next-generation sequencing data. CGAT provides an extensive suite of tools designed to assist in the analysis of genome scale data from a range of standard file formats. The toolkit enables filtering, comparison, conversion, summarization and annotation of genomic intervals, gene sets and sequences. The tools can both be run from the Unix command line and installed into visual workflow builders, such as Galaxy.
Medical subject headings
- Genomics