QCGWAS: A flexible R package for automated quality control of genome-wide association results.

van der Most, Peter J; Vaez, Ahmad; Prins, Bram P; Munoz, M Loretto; Snieder, Harold; Alizadeh, Behrooz Z; Nolte, Ilja M · Bioinformatics · 2014

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Abstract

QCGWAS is an R package that automates the quality control of genome-wide association result files. Its main purpose is to facilitate the quality control of a large number of such files before meta-analysis. Alternatively, it can be used by individual cohorts to check their own result files. QCGWAS is flexible and has a wide range of options, allowing rapid generation of high-quality input files for meta-analysis of genome-wide association studies. http://cran.r-project.org/web/packages/QCGWAS CONTACT: i.m.nolte@umcg.nl Supplementary information: Supplementary data are available at Bioinformatics online.

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