CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 24451624.
- Also identified by DOI 10.1093/bioinformatics/btu028 and PMC identifier 4016701.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
The current methods available to detect chromosomal abnormalities from DNA microarray expression data are cumbersome and inflexible. CAFE has been developed to alleviate these issues. It is implemented as an R package that analyzes Affymetrix *.CEL files and comes with flexible plotting functions, easing visualization of chromosomal abnormalities. CAFE is available from https://bitbucket.org/cob87icW6z/cafe/ as both source and compiled packages for Linux and Windows. It is released under the GPL version 3 license. CAFE will also be freely available from Bioconductor. sander.h.bollen@gmail.com or nancy.mah@mdc-berlin.de Supplementary data are available at Bioinformatics online.
Medical subject headings
- Chromosome Aberrations
- Oligonucleotide Array Sequence Analysis