HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 24475057.
- Also identified by DOI 10.1371/journal.pone.0085879 and PMC identifier 3903476.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
The HTSstation analysis portal is a suite of simple web forms coupled to modular analysis pipelines for various applications of High-Throughput Sequencing including ChIP-seq, RNA-seq, 4C-seq and re-sequencing. HTSstation offers biologists the possibility to rapidly investigate their HTS data using an intuitive web application with heuristically pre-defined parameters. A number of open-source software components have been implemented and can be used to build, configure and run HTS analysis pipelines reactively. Besides, our programming framework empowers developers with the possibility to design their own workflows and integrate additional third-party software. The HTSstation web application is accessible at http://htsstation.epfl.ch.
Medical subject headings
- Computational Biology
- Gene Library
- High-Throughput Nucleotide Sequencing
- Internet
- Software