RNAbrowse: RNA-Seq de novo assembly results browser.
Where this comes from
- Record sourced from PubMed, PMID 24823498.
- Also identified by DOI 10.1371/journal.pone.0096821 and PMC identifier 4019526.
- Licence recorded as CC BY.
- The licence permits redistribution, so the abstract is shown in full and the full text is available from the publisher.
Abstract
Transcriptome analysis based on a de novo assembly of next generation RNA sequences is now performed routinely in many laboratories. The generated results, including contig sequences, quantification figures, functional annotations and variation discovery outputs are usually bulky and quite diverse. This article presents a user oriented storage and visualisation environment permitting to explore the data in a top-down manner, going from general graphical views to all possible details. The software package is based on biomart, easy to install and populate with local data. The software package is available under the GNU General Public License (GPL) at http://bioinfo.genotoul.fr/RNAbrowse.
Medical subject headings
- Gene Expression Profiling
- Internet
- Sequence Analysis, RNA
- Software
- User-Computer Interface