iTagPlot: an accurate computation and interactive drawing tool for tag density plot.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 25792550.
- Also identified by DOI 10.1093/bioinformatics/btv166 and PMC identifier 4495303.
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Abstract
Tag density plots are very important to intuitively reveal biological phenomena from capture-based sequencing data by visualizing the normalized read depth in a region. We have developed iTagPlot to compute tag density across functional features in parallel using multicores and a grid engine and to interactively explore it in a graphical user interface. It allows us to stratify features by defining groups based on biological function and measurement, summary statistics and unsupervised clustering. http://sourceforge.net/projects/itagplot/.
Medical subject headings
- Sequence Tagged Sites
- Software