AVIA v2.0: annotation, visualization and impact analysis of genomic variants and genes.
other · Level V
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- Record sourced from PubMed, PMID 25861966.
- Also identified by DOI 10.1093/bioinformatics/btv200 and PMC identifier 4528632.
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Abstract
As sequencing becomes cheaper and more widely available, there is a greater need to quickly and effectively analyze large-scale genomic data. While the functionality of AVIA v1.0, whose implementation was based on ANNOVAR, was comparable with other annotation web servers, AVIA v2.0 represents an enhanced web-based server that extends genomic annotations to cell-specific transcripts and protein-level functional annotations. With AVIA's improved interface, users can better visualize their data, perform comprehensive searches and categorize both coding and non-coding variants. AVIA is freely available through the web at http://avia.abcc.ncifcrf.gov. Hue.Vuong@fnlcr.nih.gov Supplementary data are available at Bioinformatics online.
Medical subject headings
- Genes
- Genetic Variation
- Molecular Sequence Annotation
- Software