agplus: a rapid and flexible tool for aggregation plots.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 25995229.
- Also identified by DOI 10.1093/bioinformatics/btv322.
- No licence information is recorded for this record.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
Aggregation plots are frequently used to evaluate signal distributions at user-interested points in ChIP-Seq data analysis. agplus, a new and simple command-line tool, enables rapid and flexible generation of text tables tailored for aggregation plots from which users can easily design multiple groups based on user-definitions such as regulatory regions or transcription initiation sites. This software is implemented in Ruby, supported on Linux and Mac OSX, and freely available at http://github.com/kazumits/agplus yohkawa@epigenetics.med.kyushu-u.ac.jp.
Medical subject headings
- Chromatin Immunoprecipitation
- High-Throughput Nucleotide Sequencing
- Regulatory Sequences, Nucleic Acid
- Software
- Transcription Factors