rCGH: a comprehensive array-based genomic profile platform for precision medicine.

Commo, Frederic; Guinney, Justin; Ferté, Charles; Bot, Brian; Lefebvre, Celine; Soria, Jean-Charles; André, Fabrice · Bioinformatics · 2016

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Abstract

We present rCGH, a comprehensive array-based comparative genomic hybridization analysis workflow, integrating computational improvements and functionalities specifically designed for precision medicine. rCGH supports the major microarray platforms, ensures a full traceability and facilitates profiles interpretation and decision-making through sharable interactive visualizations. The rCGH R package is available on bioconductor (under Artistic-2.0). The aCGH-viewer is available at https://fredcommo.shinyapps.io/aCGH_viewer, and the application implementation is freely available for installation at https://github.com/fredcommo/aCGH_viewer frederic.commo@gustaveroussy.fr Supplementary data are available at Bioinformatics online.

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