MOCAT2: a metagenomic assembly, annotation and profiling framework.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 27153620.
- Also identified by DOI 10.1093/bioinformatics/btw183 and PMC identifier 4978931.
- Licence recorded as CC BY-NC.
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Abstract
MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes. MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.de : bork@embl.de Supplementary data are available at Bioinformatics online.
Medical subject headings
- Metagenomics
- Software