OpenSegSPIM: a user-friendly segmentation tool for SPIM data.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 27153681.
- Also identified by DOI 10.1093/bioinformatics/btw093.
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Abstract
OpenSegSPIM is an open access and user friendly 3D automatic quantitative analysis tool for Single Plane Illumination Microscopy data. The software is designed to extract, in a user-friendly way, quantitative relevant information from SPIM image stacks, such as the number of nuclei or cells. It provides quantitative measurement (volume, sphericity, distance, intensity) on Light Sheet Fluorescent Microscopy images. freely available from http://www.opensegspim.weebly.com Source code and binaries under BSD License. lgole@imcb.a-star.edu.sg or wmyu@imcb.a-star.edu.sg or sohail.ahmed@imb.a-star.edu.sg Supplementary data are available at Bioinformatics online.
Medical subject headings
- Image Interpretation, Computer-Assisted
- Microscopy
- Software