GHap: an R package for genome-wide haplotyping.
basic_science · Level V
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- Record sourced from PubMed, PMID 27283951.
- Also identified by DOI 10.1093/bioinformatics/btw356.
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Abstract
The GHap R package was designed to call haplotypes from phased marker data. Given user-defined haplotype blocks (HapBlock), the package identifies the different haplotype alleles (HapAllele) present in the data and scores sample haplotype allele genotypes (HapGenotype) based on HapAllele dose (i.e. 0, 1 or 2 copies). The output is not only useful for analyses that can handle multi-allelic markers, but is also conveniently formatted for existing pipelines intended for bi-allelic markers. https://cran.r-project.org/package=GHap ytutsunomiya@gmail.com Supplementary data are available at Bioinformatics online.
Medical subject headings
- Haplotypes
- Software