ReconMap: an interactive visualization of human metabolism.
basic_science · Level V
Where this comes from
- Record sourced from PubMed, PMID 27993782.
- Also identified by DOI 10.1093/bioinformatics/btw667 and PMC identifier 5408809.
- Licence recorded as CC BY-NC.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
A genome-scale reconstruction of human metabolism, Recon 2, is available but no interface exists to interactively visualize its content integrated with omics data and simulation results. We manually drew a comprehensive map, ReconMap 2.0, that is consistent with the content of Recon 2. We present it within a web interface that allows content query, visualization of custom datasets and submission of feedback to manual curators. ReconMap can be accessed via http://vmh.uni.lu , with network export in a Systems Biology Graphical Notation compliant format released under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. A Constraint-Based Reconstruction and Analysis (COBRA) Toolbox extension to interact with ReconMap is available via https://github.com/opencobra/cobratoolbox . ronan.mt.fleming@gmail.com.
Medical subject headings
- Genome, Human
- Metabolic Networks and Pathways
- Software
- Systems Biology