admixturegraph: an R package for admixture graph manipulation and fitting.
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- Record sourced from PubMed, PMID 28158333.
- Also identified by DOI 10.1093/bioinformatics/btx048 and PMC identifier 5447235.
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Abstract
Admixture graphs generalize phylogenetic trees by allowing genetic lineages to merge as well as split. In this paper we present the R package admixturegraph containing tools for building and visualizing admixture graphs, for fitting graph parameters to genetic data, for visualizing goodness of fit and for evaluating the relative goodness of fit between different graphs. GitHub: https://github.com/mailund/admixture_graph and CRAN: https://cran.r-project.org/web/packages/admixturegraph . mailund@birc.au.dk .
Medical subject headings
- Genetics, Population
- Phylogeny
- Sequence Analysis, DNA
- Software