A Cytoscape app for motif enumeration with ISMAGS.
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- Record sourced from PubMed, PMID 28158465.
- Also identified by DOI 10.1093/bioinformatics/btw626.
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Abstract
We present a Cytoscape app for the ISMAGS algorithm, which can enumerate all instances of a motif in a graph, making optimal use of the motif’s symmetries to make the search more efficient. The Cytoscape app provides a handy interface for this algorithm, which allows more efficient network analysis. The Cytoscape app for ISMAGS can be freely downloaded from the Cytoscape App store http://apps.cytoscape.org/apps/ismags. Source code and documentation for ISMAGS are available at https://github.com/biointec/ismags. Source code and documentation for the Cytoscape app are available at https://gitlab.psb.ugent.be/thpar/ISMAGS_Cytoscape. Pieter.Audenaert@intec.ugent.be or Yves.VanDePeer@psb.vib-ugent.be Supplementary data are available at Bioinformatics online.
Medical subject headings
- Computational Biology
- Software