GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data.
other · Level V
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- Record sourced from PubMed, PMID 28177067.
- Also identified by DOI 10.1093/bioinformatics/btx059 and PMC identifier 5870777.
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Abstract
SUMMARY: GLINT is a user-friendly command-line toolset for fast analysis of genome-wide DNA methylation data generated using the Illumina human methylation arrays. GLINT, which does not require any programming proficiency, allows an easy execution of Epigenome-Wide Association Study analysis pipeline under different models while accounting for known confounders in methylation data. AVAILABILITY AND IMPLEMENTATION: GLINT is a command-line software, freely available at https://github.com/cozygene/glint/releases . It requires Python 2.7 and several freely available Python packages. Further information and documentation as well as a quick start tutorial are available at http://glint-epigenetics.readthedocs.io . CONTACT: elior.rahmani@gmail.com or ehalperin@cs.ucla.edu.
Medical subject headings
- DNA Methylation
- Epigenomics
- Sequence Analysis, DNA
- Software