DeepBlueR: large-scale epigenomic analysis in R.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 28334349.
- Also identified by DOI 10.1093/bioinformatics/btx099 and PMC identifier 5870546.
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Abstract
While large amounts of epigenomic data are publicly available, their retrieval in a form suitable for downstream analysis is a bottleneck in current research. The DeepBlue Epigenomic Data Server provides a powerful interface and API for filtering, transforming, aggregating and downloading data from several epigenomic consortia. To make public epigenomic data conveniently available for analysis in R, we developed an R/Bioconductor package that connects to the DeepBlue Epigenomic Data Server, enabling users to quickly gather and transform epigenomic data from selected experiments for analysis in the Bioconductor ecosystem. http://deepblue.mpi-inf.mpg.de/R . R 3.3, Bioconductor 3.4. felipe.albrecht@mpi-inf.mpg.de or markus.list@mpi-inf.mpg.de. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Epigenomics
- Software