MISA-web: a web server for microsatellite prediction.
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- Record sourced from PubMed, PMID 28398459.
- Also identified by DOI 10.1093/bioinformatics/btx198 and PMC identifier 5870701.
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Abstract
Microsatellites are a widely-used marker system in plant genetics and forensics. The development of reliable microsatellite markers from resequencing data is challenging. We extended MISA, a computational tool assisting the development of microsatellite markers, and reimplemented it as a web-based application. We improved compound microsatellite detection and added the possibility to display and export MISA results in GFF3 format for downstream analysis. MISA-web can be accessed under http://misaweb.ipk-gatersleben.de/. The website provides tutorials, usage note as well as download links to the source code. scholz@ipk-gatersleben.de.
Medical subject headings
- Genome, Plant
- Microsatellite Repeats
- Plants
- Sequence Analysis, DNA
- Software