KMC 3: counting and manipulating k-mer statistics.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 28472236.
- Also identified by DOI 10.1093/bioinformatics/btx304.
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Abstract
Counting all k -mers in a given dataset is a standard procedure in many bioinformatics applications. We introduce KMC3, a significant improvement of the former KMC2 algorithm together with KMC tools for manipulating k -mer databases. Usefulness of the tools is shown on a few real problems. Program is freely available at http://sun.aei.polsl.pl/REFRESH/kmc . sebastian.deorowicz@polsl.pl. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Computational Biology
- Databases, Factual
- Software