PySCeSToolbox: a collection of metabolic pathway analysis tools.
basic_science · Level V
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- Record sourced from PubMed, PMID 28968872.
- Also identified by DOI 10.1093/bioinformatics/btx567.
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Abstract
PySCeSToolbox is an extension to the Python Simulator for Cellular Systems (PySCeS) that includes tools for performing generalized supply-demand analysis, symbolic metabolic control analysis, and a framework for investigating the kinetic and thermodynamic aspects of enzyme-catalyzed reactions. Each tool addresses a different aspect of metabolic behaviour, control, and regulation; the tools complement each other and can be used in conjunction to better understand higher level system behaviour. PySCeSToolbox is available on Linux, Mac OS X and Windows. It is licensed under the BSD 3-clause licence. Code, setup instructions and a link to documentation can be found at https://github.com/PySCeS/PyscesToolbox. jr@sun.ac.za. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Computational Biology
- Metabolic Networks and Pathways
- Models, Biological
- Software