ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets.
Where this comes from
- Record sourced from PubMed, PMID 29360929.
- Also identified by DOI 10.1093/bioinformatics/bty030.
- No licence information is recorded for this record.
- Because redistribution is not established, this page shows the abstract only. Follow the links below for the full text.
Abstract
Spatial Transcriptomics (ST) is a method which combines high resolution tissue imaging with high troughput transcriptome sequencing data. This data must be aligned with the images for correct visualization, a process that involves several manual steps. Here we present ST Spot Detector, a web tool that automates and facilitates this alignment through a user friendly interface. jose.fernandez.navarro@scilifelab.se. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Gene Expression Profiling
- Image Interpretation, Computer-Assisted
- Software