Sequanix: a dynamic graphical interface for Snakemake workflows.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 29361152.
- Also identified by DOI 10.1093/bioinformatics/bty034 and PMC identifier 5972652.
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Abstract
We designed a PyQt graphical user interface-Sequanix-aimed at democratizing the use of Snakemake pipelines in the NGS space and beyond. By default, Sequanix includes Sequana NGS pipelines (Snakemake format) (http://sequana.readthedocs.io), and is also capable of loading any external Snakemake pipeline. New users can easily, visually, edit configuration files of expert-validated pipelines and can interactively execute these production-ready workflows. Sequanix will be useful to both Snakemake developers in exposing their pipelines and to a wide audience of users. Source on http://github.com/sequana/sequana, bio-containers on http://bioconda.github.io and Singularity hub (http://singularity-hub.org). dimitri.desvillechabrol@pasteur.fr or thomas.cokelaer@pasteur.fr. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Computational Biology
- Data Visualization
- Software