BEL2ABM: agent-based simulation of static models in Biological Expression Language.
basic_science · Level V
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- Record sourced from PubMed, PMID 29949955.
- Also identified by DOI 10.1093/bioinformatics/bty107 and PMC identifier 6022644.
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Abstract
While cause-and-effect knowledge assembly models encoded in Biological Expression Language are able to support generation of mechanistic hypotheses, they are static and limited in their ability to encode temporality. Here, we present BEL2ABM, a software for producing continuous, dynamic, executable agent-based models from BEL templates. The tool has been developed in Java and NetLogo. Code, data and documentation are available under the Apache 2.0 License at https://github.com/pybel/bel2abm. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Language
- Software