VARAN-GIE: curation of genomic interval sets.
other · Level V
Where this comes from
- Record sourced from PubMed, PMID 30137307.
- Also identified by DOI 10.1093/bioinformatics/bty723.
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Abstract
Genomic interval sets are fundamental elements of genome annotation and are the output of countless bioinformatics applications. Nevertheless, tool support for the manual curation of these data is currently limited. We developed VARAN-GIE, an extension of the popular Integrative Genomics Viewer (IGV) that adds functionality to edit, annotate and merge genomic interval sets. Data can easily be shared with other users and imported/exported from/to multiple common data formats. VARAN-GIE binary releases, source-code, user guides and tutorials are available at https://github.com/popitsch/varan-gie/.
Medical subject headings
- Genome
- Genomics