checkMyIndex: a web-based R/Shiny interface for choosing compatible sequencing indexes.
Where this comes from
- Record sourced from PubMed, PMID 30165585.
- Also identified by DOI 10.1093/bioinformatics/bty706 and PMC identifier 6394397.
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Abstract
When sequencing several libraries simultaneously, the selection of compatible combinations of indexes is critical for ensuring that the sequencer will be able to decipher the short, sample-specific barcodes added to each fragment. However, researchers have few tools to help them choose optimal indexes. Here, we present checkMyIndex, an online R/Shiny application that facilitates the selection of the right indexes as a function of the experimental constraints. checkMyIndex is available free of charge at https://checkmyindex.pasteur.fr as an online, web-based R/Shiny application. The source code is available on GitHub at https://github.com/PF2-pasteur-fr/checkMyIndex.
Medical subject headings
- Internet
- Software