Simultaneous multiplexed amplicon sequencing and transcriptome profiling in single cells.

Saikia, Mridusmita; Burnham, Philip; Keshavjee, Sara H; Wang, Michael F Z; Heyang, Michael; Moral-Lopez, Pablo; Hinchman, Meleana M; Danko, Charles G et al. · Nat Methods · 2019

basic_science · Level V

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Abstract

We describe droplet-assisted RNA targeting by single-cell sequencing (DART-seq), a versatile technology that enables multiplexed amplicon sequencing and transcriptome profiling in single cells. We applied DART-seq to simultaneously characterize the non-A-tailed transcripts of a segmented dsRNA virus and the transcriptome of the infected cell. In addition, we used DART-seq to simultaneously determine the natively paired, variable region heavy and light chain amplicons and the transcriptome of B lymphocytes.

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