Enzyme-catalysed [6+4] cycloadditions in the biosynthesis of natural products.

Zhang, Bo; Wang, Kai Biao; Wang, Wen; Wang, Xin; Liu, Fang; Zhu, Jiapeng; Shi, Jing; Li, Ling Yu et al. · Nature · 2019

basic_science · Level V

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Abstract

Pericyclic reactions are powerful transformations for the construction of carbon-carbon and carbon-heteroatom bonds in organic synthesis. Their role in biosynthesis is increasingly apparent, and mechanisms by which pericyclases can catalyse reactions are of major interest<sup>1</sup>. [4+2] cycloadditions (Diels-Alder reactions) have been widely used in organic synthesis<sup>2</sup> for the formation of six-membered rings and are now well-established in biosynthesis<sup>3-6</sup>. [6+4] and other 'higher-order' cycloadditions were predicted<sup>7</sup> in 1965, and are now increasingly common in the laboratory despite challenges arising from the generation of a highly strained ten-membered ring system<sup>8,9</sup>. However, although enzyme-catalysed [6+4] cycloadditions have been proposed<sup>10-12</sup>, they have not been proven to occur. Here we demonstrate a group of enzymes that catalyse a pericyclic [6+4] cycloaddition, which is a crucial step in the biosynthesis of streptoseomycin-type natural products. This type of pericyclase catalyses [6+4] and [4+2] cycloadditions through a single ambimodal transition state, which is consistent with previous proposals<sup>11,12</sup>. The [6+4] product is transformed to a less stable [4+2] adduct via a facile Cope rearrangement, and the [4+2] adduct is converted into the natural product enzymatically. Crystal structures of three pericyclases, computational simulations of potential energies and molecular dynamics, and site-directed mutagenesis establish the mechanism of this transformation. This work shows how enzymes are able to catalyse concerted pericyclic reactions involving ambimodal transition states.

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