G-OnRamp: a Galaxy-based platform for collaborative annotation of eukaryotic genomes.
other · Level V
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- Record sourced from PubMed, PMID 31070714.
- Also identified by DOI 10.1093/bioinformatics/btz309 and PMC identifier 6821377.
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Abstract
G-OnRamp provides a user-friendly, web-based platform for collaborative, end-to-end annotation of eukaryotic genomes using UCSC Assembly Hubs and JBrowse/Apollo genome browsers with evidence tracks derived from sequence alignments, ab initio gene predictors, RNA-Seq data and repeat finders. G-OnRamp can be used to visualize large genomics datasets and to perform collaborative genome annotation projects in both research and educational settings. The virtual machine images and tutorials are available on the G-OnRamp web site (http://g-onramp.org/deployments). The source code is available under an Academic Free License version 3.0 through the goeckslab GitHub repository (https://github.com/goeckslab). Supplementary data are available at Bioinformatics online.
Medical subject headings
- Eukaryota