INDRA-IPM: interactive pathway modeling using natural language with automated assembly.
other · Level V
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- Record sourced from PubMed, PMID 31070726.
- Also identified by DOI 10.1093/bioinformatics/btz289 and PMC identifier 6821420.
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Abstract
INDRA-IPM (Interactive Pathway Map) is a web-based pathway map modeling tool that combines natural language processing with automated model assembly and visualization. INDRA-IPM contextualizes models with expression data and exports them to standard formats. INDRA-IPM is available at: http://pathwaymap.indra.bio. Source code is available at http://github.com/sorgerlab/indra_pathway_map. The underlying web service API is available at http://api.indra.bio:8000. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Computers
- Software