YeastSpotter: accurate and parameter-free web segmentation for microscopy images of yeast cells.

Lu, Alex X; Zarin, Taraneh; Hsu, Ian S; Moses, Alan M · Bioinformatics · 2019

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Abstract

We introduce YeastSpotter, a web application for the segmentation of yeast microscopy images into single cells. YeastSpotter is user-friendly and generalizable, reducing the computational expertise required for this critical preprocessing step in many image analysis pipelines. YeastSpotter is available at http://yeastspotter.csb.utoronto.ca/. Code is available at https://github.com/alexxijielu/yeast_segmentation. Supplementary data are available at Bioinformatics online.

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