JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis.
other · Level V
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- Record sourced from PubMed, PMID 31250907.
- Also identified by DOI 10.1093/bioinformatics/btz533.
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Abstract
JUCHMME is an open-source software package designed to fit arbitrary custom Hidden Markov Models (HMMs) with a discrete alphabet of symbols. We incorporate a large collection of standard algorithms for HMMs as well as a number of extensions and evaluate the software on various biological problems. Importantly, the JUCHMME toolkit includes several additional features that allow for easy building and evaluation of custom HMMs, which could be a useful resource for the research community. http://www.compgen.org/tools/juchmme, https://github.com/pbagos/juchmme. Supplementary data are available at Bioinformatics online.
Medical subject headings
- Algorithms
- Software