Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.

Gan, Ninghai; Zhen, Xiangkai; Liu, Yao; Xu, Xiaolong; He, Chunlin; Qiu, Jiazhang; Liu, Yancheng; Fujimoto, Grant M et al. · Nature · 2019

basic_science · Level V

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Abstract

The bacterial pathogen Legionella pneumophila creates an intracellular niche permissive for its replication by extensively modulating host-cell functions using hundreds of effector proteins delivered by its Dot/Icm secretion system<sup>1</sup>. Among these, members of the SidE family (SidEs) regulate several cellular processes through a unique phosphoribosyl ubiquitination mechanism that bypasses the canonical ubiquitination machinery<sup>2-4</sup>. The activity of SidEs is regulated by another Dot/Icm effector known as SidJ<sup>5</sup>; however, the mechanism of this regulation is not completely understood<sup>6,7</sup>. Here we demonstrate that SidJ inhibits the activity of SidEs by inducing the covalent attachment of glutamate moieties to SdeA-a member of the SidE family-at E860, one of the catalytic residues that is required for the mono-ADP-ribosyltransferase activity involved in ubiquitin activation<sup>2</sup>. This inhibition by SidJ is spatially restricted in host cells because its activity requires the eukaryote-specific protein calmodulin (CaM). We solved a structure of SidJ-CaM in complex with AMP and found that the ATP used in this reaction is cleaved at the α-phosphate position by SidJ, which-in the absence of glutamate or modifiable SdeA-undergoes self-AMPylation. Our results reveal a mechanism of regulation in bacterial pathogenicity in which a glutamylation reaction that inhibits the activity of virulence factors is activated by host-factor-dependent acyl-adenylation.

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