MEPSAnd: minimum energy path surface analysis over n-dimensional surfaces.

Marcos-Alcalde, Iñigo; López-Viñas, Eduardo; Gómez-Puertas, Paulino · Bioinformatics · 2020

other · Level V

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Abstract

n-dimensional energy surfaces are becoming computationally accessible, yet interpreting their information is not straightforward. We present minimum energy path surface analysis over n-dimensional surfaces (MEPSAnd), an open source GUI-based program that natively calculates minimum energy paths across energy surfaces of any number of dimensions. Among other features, MEPSAnd can compute the path through lowest barriers and automatically provide a set of alternative paths. MEPSAnd offers distinct plotting solutions as well as direct python scripting. MEPSAnd is freely available (under GPLv3 license) at: http://bioweb.cbm.uam.es/software/MEPSAnd/. Supplementary data are available at Bioinformatics online.

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